Clinical Genomics - NIPT Information for Care Providers

Non-Invasive Prenatal Testing (NIPT): Information for Care Providers

 

What is NIPT?
NIPT (or NIPS) for Trisomies 13, 18, 21 (Down Syndrome), and sex chromosome aneuploidy is a maternal blood test that involves analyzing cell-free DNA (derived from the placenta) from a maternal serum sample to provide a risk assessment. NIPT can be performed as early as 10 weeks gestation. The detection rate for Down syndrome is greater than 99% with a false positive rate of less than 0.1%.

 

Should I discuss NIPT with my patient?
According to the Joint Canadian College of Medical Geneticists (CCMG)/Society Obstetricians and Gynaecologists of Canada (SOGC) guidelines, “patients should be offered… maternal plasma cell-free DNA screening [NIPT] where available, with the understanding that it may not be provincially funded” [JOGC 39(9): 805-817].

 

Is NIPT funded in Nova Scotia?
Patients in Nova Scotia will be offered funded NIPT under the following circumstances:

• Women with a previous pregnancy affected with Trisomy 13, 18 or 21 are eligible for funded NIPT in the first trimester, as early as 10 weeks gestation. This is in lieu of standard screening using the MST and nuchal translucency assessments. In order to access funded NIPT, these patients must be referred to Medical Genetics or a Maternal-Fetal Medicine Specialist.
• Women who have undertaken standard screening, and are found to be at increased risk of Down syndrome based on the results of standard screening, will be seen by either Medical Genetics or Maternal-Fetal Medicine Specialists and offered the option of funded NIPT in lieu of diagnostic testing (CVS or amniocentesis).A referral is not necessary.

Patients meeting specific eligibility criteria as noted above will be provided pre-test counselling, test co-ordination, result reporting, and additional counselling as needed. 

NIPT is not offered to patients who are not at increased risk of Down syndrome either before or after standard screening tests.

 

Can patients pay for NIPT if they are not high risk?
If a patient wishes to have NIPT either in lieu of standard screening, or after receiving a low risk result after standard screening, they have the option to independently pay for the test.

 

Do patients still need to do maternal serum screening if they choose to pay for NIPT?
NO. If the patient chooses NIPT (either through eligibility for funded NIPT with Medical Genetics or a Maternal Fetal Medicine Specialist or through self-pay NIPT), then they should NOT have any further maternal serum testing.

 

What are the key points for counselling the patient about this test?
Description
NIPT is a test used to screen primarily for Trisomy 21 (Down syndrome).  NIPT analyzes cell-free DNA from the placenta that is detected in the mother’s blood to predict if the fetus may be affected.  NIPTis considered a screening testand does not perform with diagnostic accuracy. This test can also provide information about Trisomy 13, Trisomy 18, and sex chromosome aneuploidy.

Benefits

• NIPT can be done as early as 10 weeks gestation in a documented viable pregnancy.
• NIPT is much more sensitive and specific than standard screening tests for aneuploidy.
• NIPT is a blood test on the mother, and therefore the risk of pregnancy loss is not increased.

Limitations

• NIPT is a screening test
• False positive rate of 0.3% (one in 350 women will mistakenly have a high risk result)
• In a high risk population, a positive test result is true more than 90% of the time
• In a low risk population, a positive test result is true about 60-70% of the time
• Although the test approaches diagnostic accuracy, a reassuring result does not completely exclude the possibility of Down syndrome (or the other genetic conditions screened for) in the fetus. For instance, about one in 1000 pregnancies with Trisomy 21 will mistakenly have a reassuring result. NIPT tests only for the genetic condition(s) specified; it does not give information about any other genetic conditions in the fetus or family.
• NIPT has a small risk of test failure of approximately 1%.  Test failure can be related to the relative amount of cell-free DNA found in the maternal serum (fetal fraction). Factors that decrease the fetal fraction include multiple fetuses (twins or higher multiples) and maternal obesity.

What is the test performance of NIPT for common aneuploidies?

	Sensitivity	Specificity
Trisomy 21	99.9 %	99.2 %
Trisomy 18	99.9 %	96.3 %
Trisomy 13	99.9 %	91.0 %
Monosomy X	99.8 %	90.3 %

 

What is the positive predictive value (PPV) for a positive NIPT result for Trisomy 21?
Positive predictive value is the probability that a patient with a positive NIPT screening test result will actually have an affected pregnancy. The following table of the PPV for Trisomy 21 was derived using the NIPT Predictive Calculator created by the Perinatal Quality Foundation and the National Society of Genetic Counselors (https://www.perinatalquality.org/Vendors/NSGC/NIPT/).

Maternal Age in years	Age related risk for Trisomy 21	Probability of having a positive NIPT result for Trisomy 21	PPV of a positive NIPT result for Trisomy 21*
20	1/1177	~1/500	48%
35	1/296	~1/250	79%
40	1/86	~1/80	93%

*The PPV for Trisomy 21 of a high risk standard screening result ranges from <1% to 20%.

 

Following NIPT test results, how should pregnancies be managed?

• Following a negative NIPT result, the risk of aneuploidy would be greatly reduced and diagnostic testing would not be indicated, and NO FURTHER maternal serum testing should be done.
• Following a positive NIPT result, genetic counselling and diagnostic testing should be offered to confirm the diagnosis.
• Diagnostic testing is optional, but not required if the patient is choosing expectant management of the pregnancy.
• Diagnostic testing must be done if the patient is considering an interruption of pregnancy.
• A referral for genetic counselling through the Maritime Medical Genetic Service can be faxed to (902) 470-8709.
• Patients who privately pay for NIPT should still be offered a 20 week ultrasound examination to assess fetal growth and development, placentation, and amniotic fluid volume. This can be arranged in their local Diagnostic Imaging unit unless there is another indication for assessment in the high risk Fetal Assessment and Treatment Centre (FATC) clinic at the IWK.

How can self-pay NIPT be arranged?
The patient or Health Care Provider (HCP) must obtain a collection kit from the vendor of choice. The HCP is responsible for counselling the patient regarding benefits and limitations of the test and obtaining patient consent for the test. The HCP must complete all paperwork and identify a method for the blood collection. This can be done in the office, or through an outpatient blood collection service. The HCP must verify that the outpatient lab chosen is able to provide this service prior to sending the patient for blood draw.

The following Laboratories offer self-pay NIPT:
Invitae
Phone:  1-888-332-6039
Invitae.com
LifeLabs Genetics
Phone: 1 (844) 363-4357
www.lifelabsgenetics.com
DynaCare
Phone: 1 (888) 988-1888
Dynacareharmony.ca
DynacareNext@dynacare.ca

 

Where can patients take the kit to have their blood collected?

• If the HCP has the ability to collect blood in the office, it can be done there.
• Many laboratories offering this test directly to patients will provide a method of collection for patients, including a home collection by a trained health professional.
• The IWK outpatient collections lab can provide this service during the COVID-19 pandemic restrictions. An appointment must be made for the collection [(902) 497-1764]. All paperwork must be completed accurately and in entirety by the HCP, otherwise blood draw may be denied.
• Other outpatient collection labs may also be able to provide this service and it is recommended to call in advance to confirm.

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